PyALFE

PyALFE is an open-source python pipeline for Automated Lesion and Feature Extraction. It can process a clinical brain MRI study consisting of various sequences such as T1, T1 post contrast, FLAIR, T2, ADC, and CBF. It performs pre-processing, inter-seq registration, template registration, segmentation, and quantification to generate a set of numerical human-interpretable features corresponding to the lesions found in the MRI scan.