Installation

PyALFE supports Linux x86-64, Mac x86-64, and Mac arm64 and requires python >= 3.9.

Option 1: PyPI

To install, run

pip install pyalfe

Option 2: Development mode

If you want to have the latest development version, you can clone the repo

git clone https://github.com/reghbali/pyalfe.git
cd pyalfe

update the setuptools

pip install --upgrade setuptools

run the following command in the parent pyalfe directory:

pip install -e .

Option 3: Build and install

Similar to the previous option, you have to first clone the repo

git clone https://github.com/reghbali/pyalfe.git
cd pyalfe

update the build tool

pip install --upgrade build

Run the following commands in the parent pyalfe directory to build the whl file and install pyalfe

python -m build
pip install dist/pyalfe-0.1.1-py3-none-any.whl

Download models

To download deep learning models, run

pyalfe download models

Extras

If you want pyalfe to generate pyradiomics features alongside its default features you can install pyalfe with pyradiomics support. To do so, run:

pip install 'pyalfe[radiomics]'

for development installation

pip install -e  '.[radiomics]'

when performing a build and install

pip install 'dist/pyalfe-0.1.1-py3-none-any.whl[radiomics]'

If you want to use ants registration tool, you can install pyalfe with ants support:

pip install 'pyalfe[ants]'

If you want to build the docs, install pyalfe with docs support:

pip install 'pyalfe[docs]'