pyalfe.tasks.t1_postprocessing

class pyalfe.tasks.t1_postprocessing.T1Postprocessing(image_processor: ImageProcessor, pipeline_dir: PipelineDataDir, overwrite=True)

Bases: Task

This task postprocesses the t1-derived tissue segmentation to generate ventricles segmentation.

image_processor

The image processor object.

Type:

ImageProcessor

pipeline_dir

The pipeline data directory object.

Type:

PipelineDataDir

overwrite

Whether to overwrite any existing output image. Default is True.

Type:

bool

logger = <Logger T1Postprocessing (DEBUG)>

run(accession)

Runs the task for an accession.