pyalfe.tasks.t1_preprocessing

class pyalfe.tasks.t1_preprocessing.T1Preprocessing(image_processor: ImageProcessor, pipeline_dir: PipelineDataDir, overwrite=True)

Bases: object

This task preforms neck trimming and upsampling on the T1 image if needed.

image_processor

The image processor object.

Type:

ImageProcessor

pipeline_dir

The pipeline data directory object.

Type:

PipelineDataDir

overwrite

Whether to overwrite any existing output image. Default is True.

Type:

bool

logger = <Logger T1Preprocessing (DEBUG)>

run(accession)